STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC53_00124E3 ubiquitin protein ligase. (958 aa)    
Predicted Functional Partners:
ALC53_12869
Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.996
ALC53_05341
WW domain-containing adapter protein with coiled-coil.
   
 0.936
ALC53_08089
Parafibromin.
   
 0.931
ALC53_12213
RNA polymerase II-associated factor 1 like protein.
    
 0.928
ALC53_10817
Histone H2B; Belongs to the histone H2B family.
    
 0.903
ALC53_02782
Histone H2B; Belongs to the histone H2B family.
    
 0.903
ALC53_00709
Another transcription unit protein.
   
 0.890
ALC53_00292
Histone-lysine N-methyltransferase SETD2.
   
 
 0.888
ALC53_09854
RNA polymerase-associated protein CTR9 like protein.
   
 0.878
ALC53_10742
Ubiquitin-conjugating enzyme E2-22 kDa; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.876
Your Current Organism:
Atta colombica
NCBI taxonomy Id: 520822
Other names: A. colombica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.