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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEP45235.1Hypothetical protein; KEGG: oih:OB1519 1.4e-05 L-serine dehydratase alpha subunit K01752; Psort location: Cytoplasmic, score: 9.98; Belongs to the UPF0597 family. (468 aa)    
Predicted Functional Partners:
sdaAA
L-serine dehydratase, iron-sulfur-dependent, alpha subunit; KEGG: tte:TTE1009 1.7e-58 sdaA2; L-serine deaminase K01752; Psort location: Cytoplasmic, score: 8.87; Belongs to the iron-sulfur dependent L-serine dehydratase family.
 
  
  0.531
EEP45234.1
KEGG: stl:stu0906 7.2e-35 ndk; nucleoside diphosphate kinase K00940; Psort location: Cytoplasmic, score: 9.98.
       0.511
EEP44158.1
Phosphodiesterase family protein; KEGG: eci:UTI89_C2584 1.8e-31 yfcE; hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.441
Your Current Organism:
Collinsella intestinalis
NCBI taxonomy Id: 521003
Other names: C. intestinalis DSM 13280, Collinsella intestinalis DSM 13280, Collinsella intestinalis RCA56-68, Collinsella intestinalis str. DSM 13280, Collinsella intestinalis strain DSM 13280
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