STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerDTyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (333 aa)    
Predicted Functional Partners:
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737.
  
 
 0.920
EEP45089.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.738
EEP44898.1
FtsK/SpoIIIE family protein; KEGG: reh:H16_A1582 2.9e-115 DNA segregation ATPase FtsK/SpoIIIE related protein; Psort location: CytoplasmicMembrane, score: 7.63.
 
   
 0.711
topA
DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...]
  
  
 0.530
EEP43808.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
    0.526
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
    0.522
mraZ
Putative protein MraZ; Psort location: Cytoplasmic, score: 8.87; Belongs to the MraZ family.
 
   
 0.520
pta
KEGG: ctc:CTC01239 3.3e-94 phosphate acetyltransferase K00625; Psort location: Cytoplasmic, score: 8.87.
   
 0.515
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.508
EEP43986.1
Hydrolase, NUDIX family; KEGG: tte:TTE1310 3.1e-41 mutT2; NTP pyrophosphohydrolases including oxidative damage repair enzymes K01515; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.472
Your Current Organism:
Collinsella intestinalis
NCBI taxonomy Id: 521003
Other names: C. intestinalis DSM 13280, Collinsella intestinalis DSM 13280, Collinsella intestinalis RCA56-68, Collinsella intestinalis str. DSM 13280, Collinsella intestinalis strain DSM 13280
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