STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEP44243.1Peptidase M16 inactive domain protein; KEGG: det:DET1429 0.0010 peptidase, M16 family; Psort location: Cytoplasmic, score: 8.87. (1024 aa)    
Predicted Functional Partners:
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
  0.834
EEP44244.1
Hypothetical protein; KEGG: reh:H16_A2653 1.3e-17 G:T/U mismatch-specific DNA glycosylase K01249; Psort location: Cytoplasmic, score: 8.87.
  
    0.786
groL
Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
  0.775
atpE
ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
   
 
 0.774
EEP44991.1
Creatinase; KEGG: tte:TTE1280 4.5e-65 pepP; Xaa-Pro aminopeptidase K01262; Psort location: Cytoplasmic, score: 8.87; Belongs to the peptidase M24B family.
   
 
 0.619
EEP44069.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: afu:AF0455 1.7e-104 noxB-1; NADH oxidase (NoxB-1) K00359; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.586
EEP44241.1
Putative membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.573
prs
Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
   
   0.571
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.548
EEP43610.1
Hsp20/alpha crystallin family protein; Belongs to the small heat shock protein (HSP20) family.
    
   0.539
Your Current Organism:
Collinsella intestinalis
NCBI taxonomy Id: 521003
Other names: C. intestinalis DSM 13280, Collinsella intestinalis DSM 13280, Collinsella intestinalis RCA56-68, Collinsella intestinalis str. DSM 13280, Collinsella intestinalis strain DSM 13280
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