STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEP44062.1Transcriptional regulator, LacI family; Psort location: Cytoplasmic, score: 9.98. (364 aa)    
Predicted Functional Partners:
malQ
4-alpha-glucanotransferase; KEGG: cpr:CPR_0084 1.2e-98 pullulanase K01200; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.864
EEP44180.1
Phosphotransferase system, EIIC; KEGG: eca:ECA3225 5.6e-99 PTS system, alpha-glucoside-specific IIbc component K02790:K02791; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.825
EEP43931.1
Phosphotransferase system, EIIC; KEGG: bce:BC0842 1.6e-94 PTS system, sucrose-specific IIBC component K02809:K02810; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.825
EEP44704.1
Phosphocarrier, HPr family; KEGG: rso:RS05327 1.5e-11 RSp1282; probable multifunctional protein : phosphocarrier protein hpr (protein H) and phosphoenolpyruvate-protein phosphotransferase K02766:K02768:K02784; Psort location: Cytoplasmic, score: 9.65.
   
 
 0.762
glmS
Glutamine-fructose-6-phosphate transaminase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
 
 0.730
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.712
prs
Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
 0.684
EEP44753.1
Aldehyde dehydrogenase (NAD) family protein; KEGG: cpe:CPE2531 3.3e-284 adhE; alcohol dehydrogenase / acetaldehyde dehydrogenase K00001:K04072; Psort location: Cytoplasmic, score: 9.98; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
   
 
 0.666
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
    
   0.623
lysS
lysine--tRNA ligase; KEGG: lpl:lp_0550 9.3e-129 lysS; lysine--tRNA ligase K04567; Psort location: Cytoplasmic, score: 10.00; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 
 0.622
Your Current Organism:
Collinsella intestinalis
NCBI taxonomy Id: 521003
Other names: C. intestinalis DSM 13280, Collinsella intestinalis DSM 13280, Collinsella intestinalis RCA56-68, Collinsella intestinalis str. DSM 13280, Collinsella intestinalis strain DSM 13280
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