STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEP43528.1EDD domain protein, DegV family. (318 aa)    
Predicted Functional Partners:
EEP44745.1
KEGG: lwe:lwe1833 1.3e-92 DAK2 domain protein K00863; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.917
EEP43753.1
EDD domain protein, DegV family; Psort location: Cytoplasmic, score: 8.87.
  
     0.763
EEP44746.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.690
EEP43527.1
Phosphogluconate dehydrogenase (decarboxylating), NAD binding domain protein; KEGG: bsu:BG13328 5.9e-63 ykwC; similar to 3-hydroxyisobutyrate dehydrogenase K00020; Psort location: Cytoplasmic, score: 8.87.
       0.631
raiA
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
       0.612
EEP44920.1
EDD domain protein, DegV family.
  
     0.589
EEP43526.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.565
EEP44993.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.404
Your Current Organism:
Collinsella intestinalis
NCBI taxonomy Id: 521003
Other names: C. intestinalis DSM 13280, Collinsella intestinalis DSM 13280, Collinsella intestinalis RCA56-68, Collinsella intestinalis str. DSM 13280, Collinsella intestinalis strain DSM 13280
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.