STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mpal_0271KEGG: mem:Memar_0063 hypothetical protein. (483 aa)    
Predicted Functional Partners:
Mpal_0269
PFAM: protein of unknown function DUF214; KEGG: mbn:Mboo_0059 hypothetical protein.
  
    0.803
Mpal_0270
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_2931 ABC transporter related.
  
    0.801
Mpal_0272
PFAM: transcriptional regulator TrmB; KEGG: mbn:Mboo_1027 transcriptional regulator, TrmB.
       0.537
Your Current Organism:
Methanosphaerula palustris
NCBI taxonomy Id: 521011
Other names: Candidatus Methanosphaerula palustris E1-9c, M. palustris E1-9c, Methanosphaerula palustris E1-9c, Methanosphaerula palustris str. E1-9c, Methanosphaerula palustris strain E1-9c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.