STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mpal_0614PFAM: beta-lactamase domain protein; KEGG: mbn:Mboo_2086 beta-lactamase domain-containing protein. (395 aa)    
Predicted Functional Partners:
Mpal_0613
TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: mbn:Mboo_2085 desulfoferrodoxin.
  
 0.963
Mpal_0615
Rubredoxin-type Fe(Cys)4 protein; Rubredoxin is a small nonheme, iron protein lacking acid- labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
 
  
 0.874
Mpal_1089
TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: mbn:Mboo_0454 hemerythrin-like metal-binding protein.
  
  
 0.663
Mpal_0616
Hypothetical protein.
       0.658
Mpal_0301
PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: mbn:Mboo_0082 rubrerythrin.
 
  
 0.616
Mpal_1680
PFAM: Rubrerythrin; KEGG: mhu:Mhun_1311 rubrerythrin.
 
  
 0.581
Mpal_0307
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
 
  
 0.566
Mpal_0213
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mbn:Mboo_0610 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
 
   
 0.536
Mpal_0617
KEGG: cts:Ctha_1777 ATPase-like protein.
       0.518
Mpal_1967
PFAM: protein of unknown function DUF47; KEGG: mem:Memar_1039 hypothetical protein.
  
    0.509
Your Current Organism:
Methanosphaerula palustris
NCBI taxonomy Id: 521011
Other names: Candidatus Methanosphaerula palustris E1-9c, M. palustris E1-9c, Methanosphaerula palustris E1-9c, Methanosphaerula palustris str. E1-9c, Methanosphaerula palustris strain E1-9c
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