STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mpal_0900PFAM: restriction modification system DNA specificity domain; KEGG: csa:Csal_0086 restriction modification system DNA specificity protein. (471 aa)    
Predicted Functional Partners:
Mpal_0901
PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: mbn:Mboo_1031 N-6 DNA methylase.
 
 0.995
Mpal_1097
PFAM: N-6 DNA methylase; KEGG: pmo:Pmob_1896 N-6 DNA methylase.
 
 
 0.969
Mpal_1092
KEGG: mta:Moth_1670 HsdR family type I site-specific deoxyribonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases.
 
  
 0.885
Mpal_0637
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: mem:Memar_0667 putative transcriptional regulator.
  
    0.610
Mpal_0911
KEGG: cli:Clim_1467 putative transcriptional regulator.
  
    0.610
Mpal_1500
KEGG: bli:BL02386 hypothetical protein.
  
    0.607
Mpal_2041
KEGG: bli:BL02386 hypothetical protein.
  
    0.607
Mpal_0993
KEGG: mem:Memar_1159 hypothetical protein.
  
  
 0.552
Mpal_1094
PFAM: restriction modification system DNA specificity domain; KEGG: mmx:MmarC6_0041 restriction modification system DNA specificity subunit.
 
     0.542
Mpal_1609
PFAM: restriction endonuclease; KEGG: mhu:Mhun_0477 restriction endonuclease.
 
  
 0.420
Your Current Organism:
Methanosphaerula palustris
NCBI taxonomy Id: 521011
Other names: Candidatus Methanosphaerula palustris E1-9c, M. palustris E1-9c, Methanosphaerula palustris E1-9c, Methanosphaerula palustris str. E1-9c, Methanosphaerula palustris strain E1-9c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.