STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mpal_2221PFAM: ABC-2 type transporter; KEGG: mbn:Mboo_0633 ABC-2 type transporter. (241 aa)    
Predicted Functional Partners:
Mpal_2220
KEGG: mba:Mbar_A2486 ATP-binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.876
Mpal_2056
PFAM: ABC-2 type transporter; KEGG: mhu:Mhun_0287 hypothetical protein.
  
  
  0.609
Mpal_0427
PFAM: ABC-2 type transporter; KEGG: mma:MM_3224 ABC transporter, permease protein.
  
  
  0.602
Mpal_1258
PFAM: ABC-2 type transporter; KEGG: mbn:Mboo_0613 ABC-2 type transporter.
  
  
  0.594
Mpal_1460
KEGG: mbn:Mboo_1019 daunorubicin resistance ABC transporter ATPase subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.529
Mpal_2562
KEGG: mhu:Mhun_1529 daunorubicin resistance ABC transporter ATP-binding subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.527
Mpal_2467
KEGG: mbn:Mboo_2255 daunorubicin resistance ABC transporter ATPase subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.507
Mpal_1239
KEGG: mhu:Mhun_1528 hypothetical protein.
  
     0.505
Mpal_1459
PFAM: ABC-2 type transporter; KEGG: mhu:Mhun_1528 hypothetical protein.
  
  
 
0.500
Mpal_0200
PFAM: nitroreductase; KEGG: mbn:Mboo_1158 nitroreductase.
 
  
 0.499
Your Current Organism:
Methanosphaerula palustris
NCBI taxonomy Id: 521011
Other names: Candidatus Methanosphaerula palustris E1-9c, M. palustris E1-9c, Methanosphaerula palustris E1-9c, Methanosphaerula palustris str. E1-9c, Methanosphaerula palustris strain E1-9c
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