STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF36883.1Hypothetical protein. (1062 aa)    
Predicted Functional Partners:
SDF36891.1
Hypothetical protein.
       0.773
cpoB
Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
  
 0.736
SDE48254.1
Hypothetical protein.
   
 
 0.684
SDE52408.1
Cytochrome c peroxidase.
   
   0.647
SDE66461.1
Phosphate ABC transporter substrate-binding protein, PhoT family.
  
 0.608
SDF31187.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.
  
 
 0.505
SDF29447.1
OmpA-OmpF porin, OOP family.
   
  0.482
SDE32234.1
Outer membrane protein OmpA.
   
  0.482
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
  0.482
SDE48860.1
Outer membrane protein OmpA.
   
  0.482
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.