STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF39451.1FAD/FMN-containing dehydrogenase. (979 aa)    
Predicted Functional Partners:
SDE67370.1
Glutamate synthase (NADPH) large subunit.
   
 0.963
SDF39419.1
Alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase.
 
 
 0.957
SDE65353.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 
 0.949
SDE85481.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 
 0.949
SDE86097.1
L-lactate dehydrogenase (cytochrome).
  
 0.928
SDE99859.1
2-oxoisovalerate dehydrogenase E1 component.
   
 0.911
SDE95991.1
Indolepyruvate ferredoxin oxidoreductase.
  
 
 0.907
SDF09580.1
Indolepyruvate ferredoxin oxidoreductase.
  
 
 0.907
SDE18816.1
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.901
SDE79118.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 
 0.886
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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