STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF44398.1Transcriptional regulator, GntR family. (252 aa)    
Predicted Functional Partners:
SDF44366.1
Glutamine--fructose-6-phosphate transaminase.
 
  
 0.945
SDF44340.1
N-acetylglucosamine 6-phosphate deacetylase.
 
    0.916
SDF44422.1
Glucosamine kinase.
 
     0.885
SDF44479.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
 
   0.858
SDF44509.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
     0.807
SDF44533.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
     0.806
SDF44454.1
N-acetylmuramic acid 6-phosphate etherase.
 
     0.787
SDF44559.1
Predicted dehydrogenase.
 
    0.649
SDF02644.1
N-acetylglucosamine-6-phosphate deacetylase.
 
    0.627
SDE59058.1
Transcriptional regulator, contains XRE-family HTH domain.
  
  
 0.490
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.