STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF47537.1Glycosyltransferase involved in cell wall bisynthesis. (428 aa)    
Predicted Functional Partners:
SDF09913.1
Alpha-N-acetylglucosamine transferase.
   
 0.893
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
  0.832
nusG
Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination.
 
     0.803
SDE31322.1
Malto-oligosyltrehalose trehalohydrolase.
   
  0.799
SDF31394.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
 
  0.796
SDF31496.1
Hypothetical protein.
 
 
  0.760
SDF16476.1
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.729
SDF31155.1
Glycosyltransferase, GT2 family.
  
    0.713
SDE66832.1
UTP--glucose-1-phosphate uridylyltransferase.
    
 0.689
glgA
Starch synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
     
 0.684
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.