STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE04993.1LysM domain-containing protein. (479 aa)    
Predicted Functional Partners:
SDE90329.1
Bacteriophage lambda head decoration protein D.
  
 
 0.978
SDE44026.1
Hypothetical protein.
  
 
   0.790
SDE82973.1
NAD(P)H dehydrogenase (quinone).
   
  
 0.786
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.774
SDE04960.1
Hypothetical protein; Belongs to the LOG family.
    
  0.763
SDE05021.1
ATP-binding cassette, subfamily B.
       0.717
SDF31749.1
Small-conductance mechanosensitive channel.
  
  
 0.612
SDE63916.1
Hypothetical protein.
  
    0.585
dut
dUTP pyrophosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
   
 
 0.561
SDE41826.1
SH3 domain-containing protein.
    
 0.557
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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