STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE09690.1tRNA 2-thiouridine synthesizing protein A; Belongs to the sulfur carrier protein TusA family. (86 aa)    
Predicted Functional Partners:
SDE16013.1
Cysteine desulfurase.
   
 0.996
SDE61085.1
Selenophosphate synthase.
    
 0.821
SDE79118.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
    
 0.688
SDE31233.1
Rhodanese-related sulfurtransferase.
  
 
 0.687
SDE39683.1
Hypothetical protein.
 
  
 0.641
SDE91398.1
Cysteine synthase A.
  
 
 0.615
SDF08883.1
Predicted peroxiredoxin.
    
 0.615
SDE94628.1
Phosphoadenylylsulfate reductase (thioredoxin); Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
  
 
 0.601
SDF16262.1
Oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
 0.569
SDE09718.1
PRC-barrel domain-containing protein.
       0.552
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.