STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE13675.1DNA-binding transcriptional regulator, AcrR family. (205 aa)    
Predicted Functional Partners:
SDE13635.1
Polyphosphate kinase 2, PA0141 family.
       0.850
SDE18254.1
Protein of unknown function.
 
     0.785
metAA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
       0.773
SDE13606.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.773
SDE13559.1
Hypothetical protein.
       0.726
SDE50759.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
 
   0.580
SDE13530.1
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.480
SDE13714.1
DNA-binding transcriptional regulator, CsgD family.
       0.479
SDE13739.1
Lipid A 3-O-deacylase (PagL).
       0.416
SDE38727.1
Putative membrane protein.
  
     0.406
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.