STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE14515.1Hypothetical protein. (358 aa)    
Predicted Functional Partners:
SDE40419.1
PAS domain S-box-containing protein.
   
 0.967
SDF24905.1
PAS domain S-box-containing protein.
  
 0.945
SDF08954.1
PAS domain S-box-containing protein.
   
 0.929
SDE04230.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
   
 0.921
SDE42586.1
GAF domain-containing protein.
  
 
 0.851
SDE14489.1
Protein of unknown function; Manually curated.
       0.803
SDE08772.1
PAS domain S-box-containing protein.
  
 0.767
SDE06893.1
Two-component system, cell cycle sensor histidine kinase and response regulator CckA.
   
 0.755
SDE03023.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
   
 0.739
SDE37227.1
CRP/FNR family transcriptional regulator, anaerobic regulatory protein.
   
 0.739
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.