STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE18564.1Two-component sensor histidine kinase, contains HisKA and HATPase domains. (366 aa)    
Predicted Functional Partners:
SDF08954.1
PAS domain S-box-containing protein.
 
 0.997
SDF24905.1
PAS domain S-box-containing protein.
 
 0.993
SDE40419.1
PAS domain S-box-containing protein.
 
 0.984
SDE50011.1
PAS domain S-box-containing protein.
  
 0.979
SDE12094.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
  
 0.965
SDE84797.1
PAS domain S-box-containing protein.
 
 0.964
SDE04230.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
0.960
SDE70944.1
PAS domain S-box-containing protein.
 
 0.960
SDF41805.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.958
SDF24722.1
PAS domain-containing protein.
 
 0.958
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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