STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE20037.1Uncharacterized domain 1-containing protein. (146 aa)    
Predicted Functional Partners:
SDE50036.1
phenylacetate-CoA ligase.
 
  
 0.744
SDE95878.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
  0.670
SDE50086.1
Long-chain acyl-CoA synthetase.
 
     0.618
SDE20003.1
Hypothetical protein.
       0.578
SDE50165.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
  
     0.569
pcm-2
protein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
  
    0.460
SDE95796.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
  
 
 0.454
plsX
Phosphate:acyl-[acyl carrier protein] acyltransferase; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
  
  
 0.422
SDE95851.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.
  
 
  0.418
SDE95768.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.
  
 
  0.415
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.