STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE37133.1Trehalose utilization protein. (262 aa)    
Predicted Functional Partners:
SDF12148.1
Protein of unknown function.
   
    0.778
SDE37098.1
Transcriptional regulator, LacI family.
       0.628
SDE37035.1
Phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.582
SDE37066.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
       0.582
SDE36973.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.574
SDE37003.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
       0.574
SDE78442.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
     0.565
SDE37166.1
Predicted dehydrogenase.
       0.559
SDE36943.1
Raffinose/stachyose/melibiose transport system substrate-binding protein.
 
     0.512
SDE99053.1
Predicted dehydrogenase.
  
     0.511
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.