SDE38580.1 protein (Limimaricola pyoseonensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDE38580.1

Response regulator receiver domain-containing protein. (239 aa)

Predicted Functional Partners:

SDE40419.1

0.989

SDF08954.1

0.986

SDF24905.1

0.976

SDE04230.1

0.945

SDE50011.1

0.908

SDE06893.1

0.819

SDE08772.1

0.796

SDF07059.1

0.757

SDE42586.1

0.750

SDE03691.1

0.711

Your Current Organism:

Limimaricola pyoseonensis

NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDE03691.1	SDE04230.1	SAMN04488567_0596	SAMN04488567_0614	Hypothetical protein.	Two-component system, chemotaxis family, CheB/CheR fusion protein.	0.983
SDE03691.1	SDE06893.1	SAMN04488567_0596	SAMN04488567_0709	Hypothetical protein.	Two-component system, cell cycle sensor histidine kinase and response regulator CckA.	0.961
SDE03691.1	SDE08772.1	SAMN04488567_0596	SAMN04488567_0776	Hypothetical protein.	PAS domain S-box-containing protein.	0.947
SDE03691.1	SDE38580.1	SAMN04488567_0596	SAMN04488567_1494	Hypothetical protein.	Response regulator receiver domain-containing protein.	0.711
SDE03691.1	SDE40419.1	SAMN04488567_0596	SAMN04488567_1558	Hypothetical protein.	PAS domain S-box-containing protein.	0.990
SDE03691.1	SDE42586.1	SAMN04488567_0596	SAMN04488567_1636	Hypothetical protein.	GAF domain-containing protein.	0.860
SDE03691.1	SDE50011.1	SAMN04488567_0596	SAMN04488567_1908	Hypothetical protein.	PAS domain S-box-containing protein.	0.995
SDE03691.1	SDF07059.1	SAMN04488567_0596	SAMN04488567_3310	Hypothetical protein.	Two-component system, OmpR family, sensor histidine kinase ChvG.	0.717
SDE03691.1	SDF08954.1	SAMN04488567_0596	SAMN04488567_3365	Hypothetical protein.	PAS domain S-box-containing protein.	0.983
SDE03691.1	SDF24905.1	SAMN04488567_0596	SAMN04488567_3744	Hypothetical protein.	PAS domain S-box-containing protein.	0.984
SDE04230.1	SDE03691.1	SAMN04488567_0614	SAMN04488567_0596	Two-component system, chemotaxis family, CheB/CheR fusion protein.	Hypothetical protein.	0.983
SDE04230.1	SDE06893.1	SAMN04488567_0614	SAMN04488567_0709	Two-component system, chemotaxis family, CheB/CheR fusion protein.	Two-component system, cell cycle sensor histidine kinase and response regulator CckA.	0.998
SDE04230.1	SDE08772.1	SAMN04488567_0614	SAMN04488567_0776	Two-component system, chemotaxis family, CheB/CheR fusion protein.	PAS domain S-box-containing protein.	0.970
SDE04230.1	SDE38580.1	SAMN04488567_0614	SAMN04488567_1494	Two-component system, chemotaxis family, CheB/CheR fusion protein.	Response regulator receiver domain-containing protein.	0.945
SDE04230.1	SDE40419.1	SAMN04488567_0614	SAMN04488567_1558	Two-component system, chemotaxis family, CheB/CheR fusion protein.	PAS domain S-box-containing protein.	0.999
SDE04230.1	SDE42586.1	SAMN04488567_0614	SAMN04488567_1636	Two-component system, chemotaxis family, CheB/CheR fusion protein.	GAF domain-containing protein.	0.989
SDE04230.1	SDE50011.1	SAMN04488567_0614	SAMN04488567_1908	Two-component system, chemotaxis family, CheB/CheR fusion protein.	PAS domain S-box-containing protein.	0.991
SDE04230.1	SDF07059.1	SAMN04488567_0614	SAMN04488567_3310	Two-component system, chemotaxis family, CheB/CheR fusion protein.	Two-component system, OmpR family, sensor histidine kinase ChvG.	0.953
SDE04230.1	SDF08954.1	SAMN04488567_0614	SAMN04488567_3365	Two-component system, chemotaxis family, CheB/CheR fusion protein.	PAS domain S-box-containing protein.	0.999
SDE04230.1	SDF24905.1	SAMN04488567_0614	SAMN04488567_3744	Two-component system, chemotaxis family, CheB/CheR fusion protein.	PAS domain S-box-containing protein.	0.997