STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE40240.1iron(III) transport system substrate-binding protein. (353 aa)    
Predicted Functional Partners:
SDE40271.1
Two-component system, OmpR family, sensor histidine kinase TctE.
  
  0.996
SDE03907.1
iron(III) transport system permease protein.
  
 
 0.969
SDE40317.1
Two-component system, OmpR family, response regulator TctD.
 
  
  0.926
SDE40363.1
Putative tricarboxylic transport membrane protein.
 
     0.874
SDE40348.1
Putative tricarboxylic transport membrane protein.
 
     0.865
SDE68065.1
Thiamine transport system permease protein.
  
 
 0.811
SDE01522.1
iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
  0.682
SDE13767.1
Spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
  0.682
potA
Putative spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
 
  0.682
SDE91897.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
  0.682
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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