STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE40419.1PAS domain S-box-containing protein. (963 aa)    
Predicted Functional Partners:
SDE04230.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
 0.999
SDE06893.1
Two-component system, cell cycle sensor histidine kinase and response regulator CckA.
 
0.999
SDE50011.1
PAS domain S-box-containing protein.
 
0.999
SDF00560.1
Two-component system, OmpR family, sensor histidine kinase TctE.
 
 
 0.999
SDF08954.1
PAS domain S-box-containing protein.
0.999
SDF24905.1
PAS domain S-box-containing protein.
 0.999
SDF41568.1
Signal transduction histidine kinase.
   
0.998
SDE12981.1
Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL.
 
0.998
SDE14406.1
Two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ.
   
 0.998
SDE40271.1
Two-component system, OmpR family, sensor histidine kinase TctE.
 
 
 0.998
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.