STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE40856.1TadE-like protein. (179 aa)    
Predicted Functional Partners:
SDE40895.1
Flp pilus assembly protein TadG.
 
    0.970
SDE40824.1
Hypothetical protein.
 
    0.965
SDE48914.1
Pilus assembly protein CpaB.
 
  
 0.958
SDE48835.1
Pilus assembly protein CpaE.
 
  
 0.952
SDE48784.1
Tight adherence protein B.
 
  
 0.951
SDE48971.1
Hypothetical protein.
 
  
 0.842
SDE48809.1
Pilus assembly protein CpaF.
 
    0.832
SDE48887.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.808
SDE48756.1
Tight adherence protein C.
 
    0.779
SDE48675.1
Hypothetical protein.
 
    0.770
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.