STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE44657.1Glycine betaine/proline transport system substrate-binding protein. (313 aa)    
Predicted Functional Partners:
SDE44631.1
Glycine betaine/proline transport system permease protein.
 
 0.999
SDE44608.1
Glycine betaine/proline transport system ATP-binding protein.
 
 0.998
SDE79503.1
Glycine betaine/proline transport system permease protein.
 
 0.996
SDE79538.1
Glycine betaine/proline transport system ATP-binding protein.
 
 0.994
betI
Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes.
 
     0.924
SDE79471.1
Glycine betaine/proline transport system substrate-binding protein.
     
 
0.788
SDF02325.1
Glycine betaine/proline transport system substrate-binding protein.
     
  0.788
SDE44706.1
Choline-sulfatase.
 
     0.716
SDE04230.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
  0.637
SDE44727.1
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
 
     0.597
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.