STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE59470.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (228 aa)    
Predicted Functional Partners:
SDF24905.1
PAS domain S-box-containing protein.
 0.992
SDE40419.1
PAS domain S-box-containing protein.
 
 0.989
SDF08954.1
PAS domain S-box-containing protein.
 0.989
SDE12094.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 0.940
SDE04230.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
   
 0.937
SDE50011.1
PAS domain S-box-containing protein.
 
 0.918
SDF07059.1
Two-component system, OmpR family, sensor histidine kinase ChvG.
 0.906
SDF41568.1
Signal transduction histidine kinase.
 
 0.900
SDF24722.1
PAS domain-containing protein.
 0.866
SDE81526.1
Signal transduction histidine kinase.
 
 0.824
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.