STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE64159.1Two-component system, sensor histidine kinase RegB. (466 aa)    
Predicted Functional Partners:
SDE40419.1
PAS domain S-box-containing protein.
   
 0.998
SDE64094.1
Response regulator receiver protein.
 0.995
SDE50011.1
PAS domain S-box-containing protein.
   
 0.974
SDE04230.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
   
 0.951
SDF08954.1
PAS domain S-box-containing protein.
   
 0.930
SDE99859.1
2-oxoisovalerate dehydrogenase E1 component.
    
 0.929
SDF24905.1
PAS domain S-box-containing protein.
 
 
 0.870
SDE64127.1
Protein SCO1/2.
     
 0.819
SDE42586.1
GAF domain-containing protein.
  
 
 0.801
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
    
 0.796
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.