STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE77583.1Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (261 aa)    
Predicted Functional Partners:
SDF31356.1
Acyl transferase domain-containing protein.
  
 0.847
SDE77609.1
Alcohol dehydrogenase.
 
  
  0.815
SDE67370.1
Glutamate synthase (NADPH) large subunit.
    
  0.811
SDE77550.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.764
SDE06009.1
Lactoylglutathione lyase family protein.
  
     0.661
SDE95909.1
oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.
    
 0.651
SDE04592.1
Alkylhydroperoxidase AhpD family core domain-containing protein.
  
     0.582
SDF46253.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.514
SDE47050.1
(2-(2, 4-dihydroxy-6-methylphenyl)-2-oxoethyl)-4-hydroxy-2-pyrone synthase.
    
  0.478
SDF45724.1
Hypothetical protein.
  
     0.436
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.