STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE89837.1N-acetylmuramoyl-L-alanine amidase. (208 aa)    
Predicted Functional Partners:
SDE89779.1
Hypothetical protein.
       0.773
SDE89811.1
Hypothetical protein.
       0.773
SDE89958.1
Putative phage tail protein.
  
    0.616
SDE90051.1
Hypothetical protein.
       0.602
SDE90076.1
Phage tail tape measure protein, lambda family.
  
    0.592
SDE89868.1
Hypothetical protein.
       0.584
SDE89900.1
Protein of unknown function.
       0.584
SDE89928.1
Protein of unknown function.
       0.584
SDE89989.1
Hypothetical protein.
       0.584
SDE90017.1
Hypothetical protein.
       0.584
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.