STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE90301.1Phage major capsid protein E. (343 aa)    
Predicted Functional Partners:
SDE90329.1
Bacteriophage lambda head decoration protein D.
 
     0.929
SDE90214.1
Hypothetical protein.
 
     0.898
SDE90399.1
Phage portal protein, lambda family.
 
     0.886
SDE90456.1
Phage terminase, large subunit GpA.
 
     0.877
SDE90370.1
Signal peptide peptidase SppA.
 
     0.870
SDE90243.1
Hypothetical protein.
 
     0.867
SDE90190.1
Hypothetical protein.
 
     0.865
SDE90163.1
Hypothetical protein.
 
     0.837
SDE90134.1
Hypothetical protein.
 
     0.776
SDE90076.1
Phage tail tape measure protein, lambda family.
 
     0.624
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.