STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF00025.1TRAP transporter, DctM subunit. (424 aa)    
Predicted Functional Partners:
SDE99967.1
Tripartite ATP-independent transporter solute receptor, DctP family.
    0.910
SDE99998.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.881
SDE68426.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.879
SDF39388.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.849
SDE77239.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.844
SDE31035.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.819
SDF04053.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.785
SDE82453.1
C4-dicarboxylate-binding protein DctP.
  
    0.783
SDF24542.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.777
SDE31124.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.727
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.