STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF01102.1N-acetylglucosaminyl deacetylase, LmbE family. (791 aa)    
Predicted Functional Partners:
SDF01069.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
 
  
  0.947
SDF01128.1
S-adenosylmethionine uptake transporter.
 
     0.876
SDF01041.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.874
argH-2
Argininosuccinate lyase.
 
     0.853
SDF01013.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
     0.818
SDF00985.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
     0.782
SDF00901.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
 
  
  0.630
SDF12748.1
Putative aldouronate transport system substrate-binding protein.
  
     0.571
SDF12778.1
ADP-ribosylglycohydrolase.
  
     0.527
SDF00874.1
Glucosamine-6-phosphate deaminase.
    
  0.516
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.