STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF01493.1Carboxypeptidase Taq; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues. (496 aa)    
Predicted Functional Partners:
SDF01397.1
Peptide/nickel transport system permease protein.
  
    0.779
SDF01369.1
Peptide/nickel transport system permease protein.
  
    0.777
SDF01435.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.773
SDF01463.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.773
SDF01338.1
Peptide/nickel transport system substrate-binding protein.
 
     0.642
SDF01275.1
Creatinine amidohydrolase.
 
     0.536
SDF01252.1
Ketopantoate reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
 
     0.529
SDF01308.1
Transcriptional regulator, GntR family.
 
     0.499
SDF01519.1
Transcriptional regulator, LacI family.
  
    0.486
SDF01218.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.412
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.