STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF01854.1Carbohydrate ABC transporter membrane protein 2, CUT1 family. (308 aa)    
Predicted Functional Partners:
SDF01821.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 
  0.996
SDF01915.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
  0.996
SDF01888.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
  0.982
SDF13062.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
  0.923
SDF13095.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
  0.910
SDF01690.1
Stress responsive A/B Barrel Domain.
 
     0.858
SDF01796.1
Choline dehydrogenase.
 
     0.817
SDF01730.1
Choline dehydrogenase.
       0.773
SDF01764.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.773
SDF01669.1
Protein of unknown function.
 
     0.763
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.