STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF04053.1Tripartite ATP-independent transporter solute receptor, DctP family. (323 aa)    
Predicted Functional Partners:
SDF04111.1
TRAP transporter, DctM subunit.
 
 
  0.990
SDE68375.1
C4-dicarboxylate transporter, DctM subunit.
  
    0.785
SDF00025.1
TRAP transporter, DctM subunit.
  
    0.785
SDF39324.1
TRAP transporter, DctM subunit.
  
    0.784
SDE31090.1
TRAP transporter, DctM subunit.
  
    0.784
SDE77293.1
C4-dicarboxylate transporter, DctM subunit.
  
    0.784
SDF24490.1
TRAP transporter, DctM subunit.
  
    0.784
SDE40142.1
TRAP transporter, DctM subunit.
  
    0.783
SDE82398.1
C4-dicarboxylate transporter, DctM subunit.
  
    0.781
SDF22844.1
TRAP transporter, DctM subunit.
  
    0.762
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.