STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF07848.1Microcin C transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (528 aa)    
Predicted Functional Partners:
SDF07811.1
Microcin C transport system permease protein.
 
 0.985
SDF07779.1
Microcin C transport system permease protein.
 
 0.979
SDF07744.1
Microcin C transport system substrate-binding protein.
 
 
 0.953
SDE81766.1
Peptide/nickel transport system permease protein.
 
  0.946
SDE77799.1
Peptide/nickel transport system permease protein.
 
  0.923
SDE78136.1
Peptide/nickel transport system permease protein.
 
 
  0.923
SDE95351.1
Dipeptide transport system permease protein.
 
 
  0.918
SDE98629.1
Peptide/nickel transport system permease protein.
 
  0.913
SDE84705.1
Oligopeptide transport system permease protein.
 
 
  0.904
SDE84660.1
Oligopeptide transport system substrate-binding protein.
 
 
 0.892
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.