STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF13186.1Beta-glucosidase. (451 aa)    
Predicted Functional Partners:
SDE06920.1
Glucokinase; Belongs to the bacterial glucokinase family.
   
  0.850
SDF24975.1
6-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.828
SDE15122.1
Hypothetical protein.
  
 
 0.791
SDF16476.1
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
  0.728
SDF00221.1
Beta-fructofuranosidase.
   
 
 0.711
SDF00054.1
Ribose 5-phosphate isomerase B.
  
 
 0.631
SDF12182.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
    
 0.625
SDE14357.1
Cysteine-rich secretory protein family protein.
   
  0.595
SDF13158.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
  
    0.549
SDF13095.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.542
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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