STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF17149.1Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid). (241 aa)    
Predicted Functional Partners:
SDF16476.1
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.964
SDF37601.1
Capsular exopolysaccharide family.
 
 
 0.939
SDF17053.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.
 
 
  0.835
SDF17183.1
Uncharacterized conserved protein HemY, contains two TPR repeats.
       0.717
SDF31043.1
Polymer biosynthesis protein, WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.
  
 0.677
SDF31187.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.
 
 
  0.674
SDF17211.1
Polysaccharide export outer membrane protein.
  
 
 0.656
SDF17083.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 
  0.575
gmd
GDPmannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.570
SDF18416.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 
  0.542
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.