STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF18091.1Choline dehydrogenase. (553 aa)    
Predicted Functional Partners:
SDF24398.1
Nicotinate dehydrogenase subunit B.
   
   0.873
SDF18064.1
Exopolysaccharide production protein ExoQ.
 
     0.811
SDF37435.1
Glycosyltransferase involved in cell wall bisynthesis.
  
  0.783
SDF30457.1
Tfp pilus assembly protein PilF.
    
  0.729
SDF34365.1
Hypothetical protein.
    
  0.729
SDE45420.1
Hypothetical protein.
    
  0.729
SDF18385.1
Sulfotransferase family protein.
    
  0.729
SDE13215.1
Cytochrome c, mono-and diheme variants.
 
   0.723
SDF12057.1
Cytochrome c.
 
 
   0.707
SDF18118.1
Hypothetical protein.
 
     0.702
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.