STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF18183.1N-acetylglucosaminyl deacetylase, LmbE family. (301 aa)    
Predicted Functional Partners:
SDF18154.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
  0.808
SDF18217.1
Formyl transferase.
  
    0.794
SDF18255.1
Hypothetical protein.
       0.773
SDF18286.1
Succinoglycan biosynthesis protein ExoU.
       0.773
SDF19631.1
Glycosyltransferase, GT2 family.
 
     0.691
SDF19598.1
Glycosyl transferases group 1.
 
     0.690
SDF19672.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
  0.655
SDF19559.1
Sucrose-phosphate synthase.
 
 
 0.558
SDF18118.1
Hypothetical protein.
       0.444
SDF44366.1
Glutamine--fructose-6-phosphate transaminase.
    
 0.438
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.