STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF24180.1Chromate transporter. (442 aa)    
Predicted Functional Partners:
SDF24212.1
Hypothetical protein.
       0.773
SDF24121.1
PAS domain S-box-containing protein.
 
     0.581
SDF24273.1
2,5-dihydroxypyridine 5,6-dioxygenase.
 
     0.554
SDE20128.1
Transcriptional regulator, ArsR family; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
   
 0.498
SDF24243.1
Nicotinamidase-related amidase.
       0.492
SDF24146.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.480
SDF24305.1
N-formylmaleamate deformylase.
       0.415
maiA
Maleate isomerase; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.
       0.415
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.