STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF26370.1Protein of unknown function. (613 aa)    
Predicted Functional Partners:
SDF26398.1
PLD-like domain-containing protein.
     0.983
SDF26291.1
ERCC4-related helicase.
 
 
   0.957
SDF26343.1
Helicase conserved C-terminal domain-containing protein.
 
     0.953
SDF26316.1
Hypothetical protein.
 
     0.950
SDF26234.1
DNA (cytosine-5)-methyltransferase 1.
 
     0.927
SDF26207.1
DNA binding domain-containing protein, excisionase family.
 
     0.827
SDF26259.1
T/G mismatch-specific endonuclease; Manually curated.
 
     0.812
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.707
SDE10565.1
NifU homolog involved in Fe-S cluster formation.
    
   0.641
SDE43999.1
Kef-type potassium/proton antiporter, CPA2 family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
     
 0.537
Your Current Organism:
Limimaricola pyoseonensis
NCBI taxonomy Id: 521013
Other names: DSM 21424, KCTC 22372, L. pyoseonensis, Loktanella pyoseonensis, Loktanella pyoseonensis Moon et al. 2010, strain JJM85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.