STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kole_1175PFAM: Hyaluronidase; KEGG: hypothetical protein LOC100145437. (463 aa)    
Predicted Functional Partners:
Kole_1176
PFAM: ROK family protein; KEGG: bha:BH1425 glucose kinase.
  
  
 0.750
Kole_1177
Hypothetical protein.
       0.735
Kole_1178
PFAM: protein of unknown function DUF187; KEGG: mxa:MXAN_2624 putative lipoprotein.
       0.665
Kole_1179
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV_0260 sugar ABC transporter permease.
       0.654
Kole_1180
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV_0261 sugar ABC transporter permease protein.
       0.652
Kole_0127
KEGG: aba:Acid345_1410 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
   
    0.609
Kole_1720
KEGG: aba:Acid345_2130 formiminotransferase-like; TIGRFAM: glutamate formiminotransferase; PFAM: Formiminotransferase domain protein; Formiminotransferase domain protein.
 
    0.536
Kole_1182
PFAM: FAD dependent oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; KEGG: tbd:Tbd_1475 hypothetical protein.
 
     0.495
Kole_1986
PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: NAGK; N-acetylglucosamine kinase; K00884 N-acetylglucosamine kinase.
 
    0.470
Kole_1181
PFAM: extracellular solute-binding protein family 1; KEGG: cvi:CV_2897 sugar ABC transporter periplasmic sugar-binding protein.
       0.451
Your Current Organism:
Kosmotoga olearia
NCBI taxonomy Id: 521045
Other names: K. olearia TBF 19.5.1, Kosmotoga olearia TBF 19.5.1, Thermotogales bacterium TBF 19.5.1
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