STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kole_1525PFAM: polysaccharide pyruvyl transferase; KEGG: baa:BA_1468 hypothetical protein. (354 aa)    
Predicted Functional Partners:
Kole_1478
Hypothetical protein.
 
  
 0.778
Kole_1500
PFAM: S-layer domain protein; KEGG: viral A-type inclusion protein.
  
     0.772
Kole_1574
KEGG: hypothetical protein.
 
     0.732
Kole_1524
PFAM: iron-containing alcohol dehydrogenase; KEGG: pca:Pcar_2506 alcohol dehydrogenase, class IV.
       0.725
Kole_1523
KEGG: glo:Glov_1090 protein of unknown function Met10.
       0.723
Kole_2045
KEGG: spl:Spea_1424 WecB/TagA/CpsF family glycosyl transferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; Belongs to the glycosyltransferase 26 family.
 
   
 0.703
Kole_1580
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bsu:BSU35520 hypothetical protein.
 
     0.698
Kole_0210
PFAM: S-layer domain protein; KEGG: hypothetical protein.
  
     0.651
Kole_1519
PFAM: O-antigen polymerase; KEGG: vfm:VFMJ11_A1152 secreted polysaccharide polymerase.
 
     0.640
Kole_1522
TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sfu:Sfum_1281 septum site-determining protein MinD.
 
     0.620
Your Current Organism:
Kosmotoga olearia
NCBI taxonomy Id: 521045
Other names: K. olearia TBF 19.5.1, Kosmotoga olearia TBF 19.5.1, Thermotogales bacterium TBF 19.5.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.