STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kole_1663KEGG: bar:GBAA2728 pullulanase, putative; TIGRFAM: pullulanase, type I; PFAM: pullanase-associated protein; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family. (860 aa)    
Predicted Functional Partners:
Kole_0899
KEGG: bha:BH1086 required for glycogen biosynthesis; TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; PFAM: Nucleotidyl transferase.
 
 
 0.978
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
 
 
 0.977
Kole_0843
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: ank:AnaeK_4258 alpha amylase catalytic region.
 
 0.960
Kole_2007
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bha:BH2927 maltogenic amylase; Belongs to the glycosyl hydrolase 13 family.
 
 0.955
Kole_0186
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: vpa:VP2077 maltodextrin glucosidase.
 
 0.953
Kole_0242
KEGG: gur:Gura_4193 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35.
  
 
 0.952
Kole_1455
Pullulanase, type I; KEGG: baa:BA_3251 alpha amylase, catalytic domain; TIGRFAM: pullulanase, type I; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
  
  
 
0.911
Kole_1918
Glucose-1,6-bisphosphate synthase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: bsu:BSU09310 hypothetical protein.
    
 0.910
Kole_0378
PFAM: Domain of unknown function DUF1957; glycoside hydrolase family 57; KEGG: ank:AnaeK_1135 domain of unknown function DUF1957; Belongs to the glycosyl hydrolase 57 family.
     
 0.900
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
  
 0.820
Your Current Organism:
Kosmotoga olearia
NCBI taxonomy Id: 521045
Other names: K. olearia TBF 19.5.1, Kosmotoga olearia TBF 19.5.1, Thermotogales bacterium TBF 19.5.1
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