Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Kole_1948 | Kole_1949 | Kole_1948 | Kole_1949 | PFAM: HEAT domain containing protein; KEGG: hypothetical protein. | Hypothetical protein. | 0.773 |
Kole_1948 | Kole_1951 | Kole_1948 | Kole_1951 | PFAM: HEAT domain containing protein; KEGG: hypothetical protein. | KEGG: scl:sce7148 hypothetical protein. | 0.730 |
Kole_1948 | Kole_1952 | Kole_1948 | Kole_1952 | PFAM: HEAT domain containing protein; KEGG: hypothetical protein. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_0428 ABC transporter related. | 0.721 |
Kole_1948 | Kole_1953 | Kole_1948 | Kole_1953 | PFAM: HEAT domain containing protein; KEGG: hypothetical protein. | PFAM: outer membrane chaperone Skp (OmpH); KEGG: lpc:LPC_2838 outer membrane protein OmpH. | 0.721 |
Kole_1948 | Kole_1955 | Kole_1948 | Kole_1955 | PFAM: HEAT domain containing protein; KEGG: hypothetical protein. | (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.634 |
Kole_1948 | Kole_1956 | Kole_1948 | Kole_1956 | PFAM: HEAT domain containing protein; KEGG: hypothetical protein. | PFAM: protein of unknown function DUF81; KEGG: pca:Pcar_3013 hypothetical protein. | 0.488 |
Kole_1948 | dtd | Kole_1948 | Kole_1954 | PFAM: HEAT domain containing protein; KEGG: hypothetical protein. | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. | 0.634 |
Kole_1948 | gltX-2 | Kole_1948 | Kole_1950 | PFAM: HEAT domain containing protein; KEGG: hypothetical protein. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.748 |
Kole_1949 | Kole_1948 | Kole_1949 | Kole_1948 | Hypothetical protein. | PFAM: HEAT domain containing protein; KEGG: hypothetical protein. | 0.773 |
Kole_1949 | Kole_1951 | Kole_1949 | Kole_1951 | Hypothetical protein. | KEGG: scl:sce7148 hypothetical protein. | 0.721 |
Kole_1949 | Kole_1952 | Kole_1949 | Kole_1952 | Hypothetical protein. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_0428 ABC transporter related. | 0.721 |
Kole_1949 | Kole_1953 | Kole_1949 | Kole_1953 | Hypothetical protein. | PFAM: outer membrane chaperone Skp (OmpH); KEGG: lpc:LPC_2838 outer membrane protein OmpH. | 0.721 |
Kole_1949 | Kole_1955 | Kole_1949 | Kole_1955 | Hypothetical protein. | (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.634 |
Kole_1949 | Kole_1956 | Kole_1949 | Kole_1956 | Hypothetical protein. | PFAM: protein of unknown function DUF81; KEGG: pca:Pcar_3013 hypothetical protein. | 0.476 |
Kole_1949 | dtd | Kole_1949 | Kole_1954 | Hypothetical protein. | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. | 0.634 |
Kole_1949 | gltX-2 | Kole_1949 | Kole_1950 | Hypothetical protein. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.737 |
Kole_1951 | Kole_1948 | Kole_1951 | Kole_1948 | KEGG: scl:sce7148 hypothetical protein. | PFAM: HEAT domain containing protein; KEGG: hypothetical protein. | 0.730 |
Kole_1951 | Kole_1949 | Kole_1951 | Kole_1949 | KEGG: scl:sce7148 hypothetical protein. | Hypothetical protein. | 0.721 |
Kole_1951 | Kole_1952 | Kole_1951 | Kole_1952 | KEGG: scl:sce7148 hypothetical protein. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_0428 ABC transporter related. | 0.790 |
Kole_1951 | Kole_1953 | Kole_1951 | Kole_1953 | KEGG: scl:sce7148 hypothetical protein. | PFAM: outer membrane chaperone Skp (OmpH); KEGG: lpc:LPC_2838 outer membrane protein OmpH. | 0.790 |
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