STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kole_2007PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bha:BH2927 maltogenic amylase; Belongs to the glycosyl hydrolase 13 family. (663 aa)    
Predicted Functional Partners:
Kole_1455
Pullulanase, type I; KEGG: baa:BA_3251 alpha amylase, catalytic domain; TIGRFAM: pullulanase, type I; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
 
 0.956
Kole_1663
KEGG: bar:GBAA2728 pullulanase, putative; TIGRFAM: pullulanase, type I; PFAM: pullanase-associated protein; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
 
 0.955
Kole_0242
KEGG: gur:Gura_4193 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35.
  
 0.930
Kole_0843
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: ank:AnaeK_4258 alpha amylase catalytic region.
  
  
 
0.929
Kole_1174
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cja:CJA_0732 oligo-1,6-glucosidase, putative, glu13A.
  
  
 
0.927
Kole_0585
Alpha-glucosidase; PFAM: glycoside hydrolase family 31; KEGG: scl:sce3449 Alpha-glucosidase family protein; Belongs to the glycosyl hydrolase 31 family.
 
 
 0.926
Kole_0186
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: vpa:VP2077 maltodextrin glucosidase.
  
  
 
0.920
Kole_0378
PFAM: Domain of unknown function DUF1957; glycoside hydrolase family 57; KEGG: ank:AnaeK_1135 domain of unknown function DUF1957; Belongs to the glycosyl hydrolase 57 family.
     
 0.908
Kole_0120
PFAM: amino acid permease-associated region; Spore germination protein; KEGG: nis:NIS_0790 amino acid transporter.
   
 0.696
Kole_1394
PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_00440 maltose ABC transporter periplasmic protein.
 
  
 0.581
Your Current Organism:
Kosmotoga olearia
NCBI taxonomy Id: 521045
Other names: K. olearia TBF 19.5.1, Kosmotoga olearia TBF 19.5.1, Thermotogales bacterium TBF 19.5.1
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