STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kole_2008PFAM: ATPase; DUF234 DEXX-box ATPase; KEGG: sat:SYN_01513 ATPase. (457 aa)    
Predicted Functional Partners:
Kole_0231
KEGG: lpn:lpg2913 hypothetical protein.
  
     0.616
Kole_0069
SMART: AAA ATPase; KEGG: sat:SYN_01506 ATPase.
  
     0.591
Kole_2006
PFAM: ATPase; KEGG: sat:SYN_01506 ATPase.
  
     0.585
Kole_0074
SMART: AAA ATPase; KEGG: sat:SYN_01506 ATPase.
  
     0.584
Kole_1979
KEGG: sun:SUN_0582 hypothetical protein.
  
     0.479
Kole_0079
SMART: AAA ATPase; KEGG: cbd:CBUD_1375 hypothetical ATPase.
  
     0.476
Kole_1259
ATPase (AAA+ superfamily)-like protein; KEGG: cbd:CBUD_1375 hypothetical ATPase.
  
     0.474
Kole_0073
KEGG: abu:Abu_1480 hypothetical protein.
  
     0.469
Kole_2007
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bha:BH2927 maltogenic amylase; Belongs to the glycosyl hydrolase 13 family.
       0.454
Your Current Organism:
Kosmotoga olearia
NCBI taxonomy Id: 521045
Other names: K. olearia TBF 19.5.1, Kosmotoga olearia TBF 19.5.1, Thermotogales bacterium TBF 19.5.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.