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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kole_2139PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: gme:Gmet_2613 twin-arginine translocation pathway signal. (118 aa)    
Predicted Functional Partners:
Kole_2138
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: gsu:GSU3188 rubredoxin.
  
  
 0.883
Kole_1337
PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: cha:CHAB381_0232 flavodoxin.
 
  
 0.692
Kole_0144
Ferroxidase; Iron-storage protein.
  
  
 0.663
Kole_2137
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dat:HRM2_41090 PorA2.
  
  
 0.642
Kole_2136
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dvm:DvMF_0185 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit.
  
    0.587
Kole_0101
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin.
  
  
 0.559
Kole_2140
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dal:Dalk_2742 ribonuclease III.
       0.505
Kole_0159
PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: NAD(FAD)-dependent dehydrogenase.
  
  
 0.409
Your Current Organism:
Kosmotoga olearia
NCBI taxonomy Id: 521045
Other names: K. olearia TBF 19.5.1, Kosmotoga olearia TBF 19.5.1, Thermotogales bacterium TBF 19.5.1
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